Module 7

Aquatic Biomes

Water covers 71% of Earth’s surface and contains life from sunlit coastal shallows to abyssal trenches 11 km down. Marine and freshwater biomes share fundamental ecological principles but differ dramatically in ionic composition, scale, and species assemblages. This module covers ocean zonation, coral reefs, the biological pump, and the freshwater biodiversity crisis.

1. Ocean Vertical Zonation

  • Photic zone (0–200 m): sufficient light for photosynthesis. Phytoplankton fix CO2 here; basis of all marine food webs. Contains ~50% of Earth’s primary production.
  • Mesopelagic (200–1 000 m): “twilight zone,” faint light but no photosynthesis. Massive diel vertical migrations of zooplankton + mesopelagic fish transport carbon downward (biological pump).
  • Bathypelagic (1 000–4 000 m): complete darkness, near-freezing, high pressure. Bioluminescence near-universal. Food from marine snow sinking from above.
  • Abyssal (4 000–6 000 m): covers ~60% of Earth’s surface (!). Hydrothermal vents support chemosynthetic communities independent of solar energy — the only ecosystems on Earth that do.
  • Hadal (>6 000 m): oceanic trenches. The Challenger Deep (Mariana Trench) at 10 984 m hosts specialised amphipod and fish fauna under ~110 MPa pressure.

2. The Biological Pump

Phytoplankton fix ~50 Gt C yr-1 at the surface; a fraction sinks as dead cells, faecal pellets, and aggregates (“marine snow”) through the water column, transferring carbon from surface to deep ocean on timescales of centuries to millennia. The biological pump sequesters ~10 Gt C yr-1; without it, atmospheric CO2 would be 150–200 ppm higher (Sigman 2000).

3. Coral Reefs

Coral reefs occupy <0.1% of ocean area yet host ~25% of all marine species. The paradox — tropical seas nutrient-poor yet reefs productive — is resolved by extreme internal recycling between coral polyps and their photosynthetic endosymbionts (Symbiodinium dinoflagellates), with tight coupling between benthic and pelagic compartments. Loss of Symbiodinium during thermal stress causes the coral to whiten (bleach):

\[ \text{DHW} \;=\; \sum_i \max(T_i - T_{\text{MMM}}, 0)\cdot \Delta t,\quad \text{bleach at DHW} \geq 4 \]

Mass-bleaching events on the Great Barrier Reef in 2016, 2017, 2020, 2022, and 2024 have pushed >50% of historical coral cover below recovery thresholds across much of the northern and central GBR.

Simulation: Ocean Zonation & Bleaching

Python
script.py47 lines

Click Run to execute the Python code

Code will be executed with Python 3 on the server

4. Freshwater Biomes

Despite covering <1% of Earth’s surface, freshwater systems host ~10% of all known species and ~40% of all fish species. Categories:

SystemKey featureExample
Oligotrophic lakesLow nutrients, deep, clear, O2-richBaikal, Tahoe
Eutrophic lakesHigh nutrients, algal blooms, hypoxiaErie (historical)
Rivers & streamsLotic flow; riffle-pool, River Continuum ConceptAmazon, Congo, Yangtze
WetlandsTransitional, seasonally/permanently floodedPantanal, Okefenokee

The Living Planet Index reports freshwater vertebrate populations have declined ~84% since 1970 — the steepest drop of any ecosystem. Drivers: dam construction, abstraction, pollution, invasive species, and climate change.

5. Threats

Ocean acidification has dropped surface pH by ~0.1 since 1750 (a 30% increase in H+) as ~30% of emitted CO2 has dissolved into seawater. Warming reduces oxygen solubility; ocean deoxygenation reached ~2% since 1960 (Schmidtko 2017). Plastic pollution inputs ~8 Mt/yr; fisheries landings peaked in the 1990s. Marine biodiversity crisis is multi-driver and accelerating.

Key References

• Hughes, T. P. et al. (2017). “Global warming and recurrent mass bleaching of corals.” Nature, 543, 373–377.

• Sigman, D. M. & Boyle, E. A. (2000). “Glacial/interglacial variations in atmospheric carbon dioxide.” Nature, 407, 859–869.

• Schmidtko, S., Stramma, L. & Visbeck, M. (2017). “Decline in global oceanic oxygen content during the past five decades.” Nature, 542, 335–339.

• Tickner, D. et al. (2020). “Bending the curve of global freshwater biodiversity loss: an emergency recovery plan.” BioScience, 70, 330–342.